Inverting Self-Organizing Maps: A Unified Activation-Based Framework

Self-Organizing Maps provide topology-preserving projections of high-dimensional data and have been widely used for visualization, clustering, and vector quantization. In this work, we show that the activation pattern of a SOM - the squared distances to its prototypes - can be inverted to recover the exact input under mild geometric conditions. This follows from a classical fact in Euclidean distance geometry: a point in $D$ dimensions is uniquely determined by its distances to $D{+}1$ affinely independent references. We derive the corresponding linear system and characterize the conditions under which the inversion is well-posed. Building upon this mechanism, we introduce the Manifold-Aware Unified SOM Inversion and Control (MUSIC) update rule, which enables controlled, semantically meaningful trajectories in latent space. MUSIC modifies squared distances to selected prototypes while preserving others, resulting in a deterministic geometric flow aligned with the SOM's piecewise-linear structure. Tikhonov regularization stabilizes the update rule and ensures smooth motion on high-dimensional datasets. Unlike variational or probabilistic generative models, MUSIC does not rely on sampling, latent priors, or encoder-decoder architectures. If no perturbation is applied, inversion recovers the exact input; when a target cluster or prototype is specified, MUSIC produces coherent semantic variations while remaining on the data manifold. This leads to a new perspective on data augmentation and controllable latent exploration based solely on prototype geometry. We validate the approach using synthetic Gaussian mixtures, the MNIST and the Faces in the Wild dataset. Across all settings, MUSIC produces smooth, interpretable trajectories that reveal the underlying geometry of the learned manifold, illustrating the advantages of SOM-based inversion over unsupervised clustering.